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LOC104921918 polypeptide N-acetylgalactosaminyltransferase 10 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104921918, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104921918
Gene description
polypeptide N-acetylgalactosaminyltransferase 10
Locus tag
EH28_04738
See related
Ensembl:ENSLCRG00005023285
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
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Genomic context

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See LOC104921918 in Genome Data Viewer
Location:
chromosome: XXII
Exon count:
12
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XXII NC_040032.1 (21724532..21809813)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609601.1 (18311..100415)

Chromosome XXII - NC_040032.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 114 member A2 Neighboring gene microfibril associated protein 3 Neighboring gene polypeptide N-acetylgalactosaminyltransferase 10 Neighboring gene uncharacterized LOC113744355 Neighboring gene sap30-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040032.1 Reference L_crocea_2.0 Primary Assembly

    Range
    21724532..21809813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027273455.1 → XP_027129256.1  polypeptide N-acetylgalactosaminyltransferase 10

    UniProtKB/TrEMBL
    A0A0F8AFK4, A0A0F8B5L6
    Related
    ENSLCRP00005063545.1, ENSLCRT00005064560.1
    Conserved Domains (2) summary
    cd02510
    Location:148 → 443
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    pfam00652
    Location:459 → 587
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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