U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104921889, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Locus tag
EH28_02915
See related
Ensembl:ENSLCRG00005023256
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sgcd in Genome Data Viewer
Location:
chromosome: XXII
Exon count:
12
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XXII NC_040032.1 (20899801..21218322, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609051.1 (235510..248203, complement)

Chromosome XXII - NC_040032.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized LOC113744361 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040032.1 Reference L_crocea_2.0 Primary Assembly

    Range
    20899801..21218322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027273262.1 → XP_027129063.1  delta-sarcoglycan isoform X2

    Related
    ENSLCRP00005063425.1, ENSLCRT00005064438.1

  2. XM_027273261.1 → XP_027129062.1  delta-sarcoglycan isoform X1

    Related
    ENSLCRP00005063427.1, ENSLCRT00005064440.1
    Conserved Domains (1) summary
    pfam04790
    Location:23 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_027273263.1 → XP_027129064.1  delta-sarcoglycan isoform X2

    Related
    ENSLCRP00005063426.1, ENSLCRT00005064439.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.