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tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104921473, updated on 12-Mar-2024

Summary

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Gene symbol
tmtc4
Gene description
transmembrane O-mannosyltransferase targeting cadherins 4
Locus tag
EH28_17647
See related
Ensembl:ENSLCRG00005013665
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
Orthologs
human zebrafish all
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Genomic context

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See tmtc4 in Genome Data Viewer
Location:
chromosome: XVIII
Exon count:
18
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XVIII NC_040028.1 (19034080..19043691)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609900.1 (1128331..1137807)

Chromosome XVIII - NC_040028.1Genomic Context describing neighboring genes Neighboring gene integrin, beta-like 1 Neighboring gene sodium leak channel, non-selective Neighboring gene zic family member 2 (odd-paired homolog, Drosophila), a Neighboring gene zic family member 5 (odd-paired homolog, Drosophila)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endoplasmic reticulum unfolded protein response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 4
Names
Transmembrane and TPR repeat-containing protein 4
transmembrane and tetratricopeptide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040028.1 Reference L_crocea_2.0 Primary Assembly

    Range
    19034080..19043691
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010734013.3 → XP_010732315.3  transmembrane and TPR repeat-containing protein 4

    Related
    ENSLCRP00005035214.1, ENSLCRT00005035870.1
Nucleotide Protein
Heading Accession and Version

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