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LOC104918456 torsin-1A-interacting protein 2 [ Larimichthys crocea (large yellow croaker) ]

Gene ID: 104918456, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104918456
Gene description
torsin-1A-interacting protein 2
Locus tag
EH28_09531
See related
Ensembl:ENSLCRG00005011828
Gene type
protein coding
RefSeq status
MODEL
Organism
Larimichthys crocea
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Sciaenidae; Larimichthys
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Genomic context

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See LOC104918456 in Genome Data Viewer
Location:
chromosome: XVII
Exon count:
9
Annotation release Status Assembly Chr Location
102 current L_crocea_2.0 (GCF_000972845.2) XVII NC_040027.1 (18388521..18392939, complement)
101 previous assembly L_crocea_1.0 (GCF_000972845.1) Unplaced Scaffold NW_017609715.1 (479715..484089)

Chromosome XVII - NC_040027.1Genomic Context describing neighboring genes Neighboring gene chemokine (C motif) receptor 1a, duplicate 1 Neighboring gene cell wall integrity and stress response component 4 Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Larimichthys crocea Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference L_crocea_2.0 Primary Assembly

Genomic

  1. NC_040027.1 Reference L_crocea_2.0 Primary Assembly

    Range
    18388521..18392939 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010730226.3 → XP_010728528.3  torsin-1A-interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A6G0ISD0

  2. XM_010730225.3 → XP_010728527.3  torsin-1A-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A6G0ISD0
    Related
    ENSLCRP00005029761.1, ENSLCRT00005030349.1
Nucleotide Protein
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