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LOC104908872 probable cyclic nucleotide-gated ion channel 16 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104908872, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104908872
Gene description
probable cyclic nucleotide-gated ion channel 16
Locus tag
BVRB_7g179430
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104908872 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 7 NC_079208.1 (19084785..19102141, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 7 NC_064023.1 (23780256..23797620)

Chromosome 7 - NC_079208.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125491807 Neighboring gene uncharacterized LOC104908881 Neighboring gene uncharacterized LOC109133597 Neighboring gene auxin-binding protein T85 Neighboring gene uncharacterized LOC125491638

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cyclic nucleotide-gated ion channel 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079208.1 Reference EL10.2 Primary Assembly

    Range
    19084785..19102141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010698039.2 → XP_010696341.1  probable cyclic nucleotide-gated ion channel 16

    UniProtKB/TrEMBL
    A0A0J8BAR5
    Conserved Domains (3) summary
    COG0664
    Location:441 → 578
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:447 → 579
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:84 → 371
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version

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