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LOC104908838 probable pectate lyase 12 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104908838, updated on 6-Jun-2024

Summary

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Gene symbol
LOC104908838
Gene description
probable pectate lyase 12
Locus tag
BVRB_7g179150
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104908838 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 7 NC_079208.1 (9153880..9168106)
102 previous assembly EL10_1.0 (GCF_002917755.1) 7 NC_064023.1 (13074858..13089085, complement)

Chromosome 7 - NC_079208.1Genomic Context describing neighboring genes Neighboring gene small heat shock protein, chloroplastic Neighboring gene uncharacterized LOC125491709 Neighboring gene transcription factor MYB27 Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectate lyase 12

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079208.1 Reference EL10.2 Primary Assembly

    Range
    9153880..9168106
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048648526.2 → XP_048504483.1  probable pectate lyase 12 isoform X2

    UniProtKB/TrEMBL
    A0A0J8B740

  2. XM_010698001.4 → XP_010696303.2  probable pectate lyase 12 isoform X1

    UniProtKB/TrEMBL
    A0A0J8B740
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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