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LOC104904829 pathogenesis-related protein 1A [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104904829, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104904829
Gene description
pathogenesis-related protein 1A
Locus tag
BVRB_9g222590
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104904829 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 9 NC_079210.1 (53934851..53935639, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 9 NC_064025.1 (32718966..32719757, complement)

Chromosome 9 - NC_079210.1Genomic Context describing neighboring genes Neighboring gene pathogenesis-related protein PR-1 type Neighboring gene pathogenesis-related protein PR-1 type Neighboring gene pathogenesis-related protein 1C Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pathogenesis-related protein 1A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079210.1 Reference EL10.2 Primary Assembly

    Range
    53934851..53935639 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010693223.4 → XP_010691525.2  pathogenesis-related protein 1A

Nucleotide Protein
Heading Accession and Version

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