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LOC104901959 pathogenesis-related protein PR-1 type [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104901959, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104901959
Gene description
pathogenesis-related protein PR-1 type
Locus tag
BVRB_8g193560
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104901959 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 8 NC_079209.1 (55092983..55093768, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 8 NC_064024.1 (6675568..6676318)

Chromosome 8 - NC_079209.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At4g14103 Neighboring gene uncharacterized LOC125492443 Neighboring gene uncharacterized LOC104901961 Neighboring gene uncharacterized LOC125492440

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pathogenesis-related protein PR-1 type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079209.1 Reference EL10.2 Primary Assembly

    Range
    55092983..55093768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010689595.4 → XP_010687897.1  pathogenesis-related protein PR-1 type

    See identical proteins and their annotated locations for XP_010687897.1

    Conserved Domains (1) summary
    cd05381
    Location:28 → 164
    SCP_PR-1_like; SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily. The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal ...
Nucleotide Protein
Heading Accession and Version

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