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LOC104893938 hypothetical protein [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104893938, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104893938
Gene description
hypothetical protein
Locus tag
BVRB_5g113610
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104893938 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 5 NC_079206.1 (52976595..52981068, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 5 NC_064021.1 (13092477..13096959)

Chromosome 5 - NC_079206.1Genomic Context describing neighboring genes Neighboring gene transcription factor BIM2 Neighboring gene uncharacterized LOC104893957 Neighboring gene protein FAR1-RELATED SEQUENCE 1-like Neighboring gene uncharacterized LOC104893937

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhamnogalacturonan I rhamnosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079206.1 Reference EL10.2 Primary Assembly

    Range
    52976595..52981068 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010680079.4 → XP_010678381.1  rhamnogalacturonan I rhamnosyltransferase 1

    See identical proteins and their annotated locations for XP_010678381.1

    UniProtKB/TrEMBL
    A0A0J8CFS3
    Conserved Domains (2) summary
    cd11299
    Location:128 → 453
    O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    pfam10250
    Location:131 → 454
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein
Heading Accession and Version

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