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LOC104893415 probable cyclic nucleotide-gated ion channel 5 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104893415, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104893415
Gene description
probable cyclic nucleotide-gated ion channel 5
Locus tag
BVRB_5g110040
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104893415 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 5 NC_079206.1 (27086675..27107231, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 5 NC_064021.1 (33221192..33241764)

Chromosome 5 - NC_079206.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104893416 Neighboring gene hypothetical protein Neighboring gene uncharacterized LOC130591454 Neighboring gene uncharacterized LOC130591455

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cyclic nucleotide-gated ion channel 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079206.1 Reference EL10.2 Primary Assembly

    Range
    27086675..27107231 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048644666.2 → XP_048500623.1  probable cyclic nucleotide-gated ion channel 5 isoform X2

  2. XM_048644665.2 → XP_048500622.1  probable cyclic nucleotide-gated ion channel 5 isoform X1

  3. XM_010679520.4 → XP_010677822.1  probable cyclic nucleotide-gated ion channel 5 isoform X3

    See identical proteins and their annotated locations for XP_010677822.1

    Conserved Domains (3) summary
    COG0664
    Location:499 → 624
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:505 → 636
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:149 → 434
    Ion_trans; Ion transport protein

  4. XM_010679523.4 → XP_010677825.1  probable cyclic nucleotide-gated ion channel 5 isoform X4

    Conserved Domains (3) summary
    COG0664
    Location:437 → 562
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:443 → 574
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:87 → 372
    Ion_trans; Ion transport protein

  5. XM_010679521.3 → XP_010677823.1  probable cyclic nucleotide-gated ion channel 5 isoform X3

    See identical proteins and their annotated locations for XP_010677823.1

    Conserved Domains (3) summary
    COG0664
    Location:499 → 624
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:505 → 636
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:149 → 434
    Ion_trans; Ion transport protein

  6. XM_010679522.4 → XP_010677824.1  probable cyclic nucleotide-gated ion channel 5 isoform X3

    See identical proteins and their annotated locations for XP_010677824.1

    Conserved Domains (3) summary
    COG0664
    Location:499 → 624
    Crp; cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
    cd00038
    Location:505 → 636
    CAP_ED; effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO ...
    pfam00520
    Location:149 → 434
    Ion_trans; Ion transport protein
Nucleotide Protein
Heading Accession and Version

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