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LOC104892239 WRKY transcription factor 22 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104892239, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104892239
Gene description
WRKY transcription factor 22
Locus tag
BVRB_5g099870
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104892239 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 5 NC_079206.1 (3444403..3458471, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 5 NC_064021.1 (55764537..55779469)

Chromosome 5 - NC_079206.1Genomic Context describing neighboring genes Neighboring gene endoglucanase Neighboring gene uncharacterized LOC104887410 Neighboring gene uncharacterized LOC109134872 Neighboring gene hypothetical protein Neighboring gene 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WRKY transcription factor 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079206.1 Reference EL10.2 Primary Assembly

    Range
    3444403..3458471 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048645183.2 → XP_048501140.1  WRKY transcription factor 22 isoform X2

  2. XM_048645181.2 → XP_048501138.1  WRKY transcription factor 22 isoform X2

  3. XM_048645178.2 → XP_048501135.1  WRKY transcription factor 22 isoform X2

  4. XM_048645179.2 → XP_048501136.1  WRKY transcription factor 22 isoform X2

  5. XM_048645180.2 → XP_048501137.1  WRKY transcription factor 22 isoform X2

  6. XM_010678110.4 → XP_010676412.1  WRKY transcription factor 22 isoform X1

    See identical proteins and their annotated locations for XP_010676412.1

    Conserved Domains (1) summary
    smart00774
    Location:134 → 190
    WRKY; DNA binding domain
Nucleotide Protein
Heading Accession and Version

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