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LOC104890465 calcium-dependent protein kinase SK5 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104890465, updated on 18-Sep-2024

Summary

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Gene symbol
LOC104890465
Gene description
calcium-dependent protein kinase SK5
Locus tag
BVRB_4g077520
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104890465 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 4 NC_079205.1 (58304156..58308902, complement)
102 previous assembly EL10_1.0 (GCF_002917755.1) 4 NC_064020.1 (54051573..54056321, complement)

Chromosome 4 - NC_079205.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104890468 Neighboring gene putative pentatricopeptide repeat-containing protein At5g08490 Neighboring gene VQ motif-containing protein 31 Neighboring gene uncharacterized LOC104890464 Neighboring gene probable inactive histone-lysine N-methyltransferase SUVR2 Neighboring gene plasmodesmata-located protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autophosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-dependent protein kinase SK5
Names
calmcium/calmodulin-dependent protein kinase CDPK2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079205.1 Reference EL10.2 Primary Assembly

    Range
    58304156..58308902 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010675971.4 → XP_010674273.1  calcium-dependent protein kinase SK5

    UniProtKB/TrEMBL
    J3SIC5
    Conserved Domains (4) summary
    PTZ00184
    Location:323 → 462
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:335 → 394
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd05117
    Location:29 → 286
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
    pfam00069
    Location:29 → 287
    Pkinase; Protein kinase domain
Nucleotide Protein
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