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LOC104884891 cyclic nucleotide-gated ion channel 1 [ Beta vulgaris subsp. vulgaris ]

Gene ID: 104884891, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104884891
Gene description
cyclic nucleotide-gated ion channel 1
Locus tag
BVRB_1g003220
Gene type
protein coding
RefSeq status
MODEL
Organism
Beta vulgaris subsp. vulgaris (sub-species: vulgaris)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Betoideae; Beta
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Genomic context

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See LOC104884891 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current EL10.2 (GCF_026745355.1) 1 NC_079202.1 (60796837..60811446)
102 previous assembly EL10_1.0 (GCF_002917755.1) 1 NC_064017.1 (3407871..3423681, complement)

Chromosome 1 - NC_079202.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125492953 Neighboring gene uncharacterized LOC125492910 Neighboring gene uncharacterized LOC125492901 Neighboring gene probable galacturan 1,4-alpha-galacturonidase SALK6 Neighboring gene long chain acyl-CoA synthetase 4 Neighboring gene non-specific lipid-transfer protein A Neighboring gene beclin-1-like protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables monoatomic ion channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic nucleotide-gated ion channel 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_026745355.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EL10.2 Primary Assembly

Genomic

  1. NC_079202.1 Reference EL10.2 Primary Assembly

    Range
    60796837..60811446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010669622.4 → XP_010667924.2  cyclic nucleotide-gated ion channel 1 isoform X2

  2. XM_048635570.2 → XP_048491527.1  cyclic nucleotide-gated ion channel 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases