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Adar adenosine deaminase RNA specific [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104876050, updated on 12-Mar-2024

Summary

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Gene symbol
Adar
Gene description
adenosine deaminase RNA specific
Locus tag
H920_13742
See related
Ensembl:ENSFDAG00000016081
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Adar in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900945.1 (56083168..56105685)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046095.1 (2236696..2258474)

NW_022900945.1Genomic Context describing neighboring genes Neighboring gene small conductance calcium-activated potassium channel protein 3 Neighboring gene small conductance calcium-activated potassium channel protein 3 Neighboring gene uncharacterized LOC104876051 Neighboring gene cholinergic receptor nicotinic beta 2 subunit Neighboring gene ubiquitin conjugating enzyme E2 Q1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-specific adenosine deaminase
Names
Double-stranded RNA-specific adenosine deaminase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900945.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    56083168..56105685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010643930.3 → XP_010642232.1  double-stranded RNA-specific adenosine deaminase isoform X5

    UniProtKB/TrEMBL
    A0A091D3X5
    Conserved Domains (3) summary
    smart00358
    Location:458 → 523
    DSRM; Double-stranded RNA binding motif
    smart00552
    Location:791 → 1147
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cl02659
    Location:138 → 203
    z-alpha; Adenosine deaminase z-alpha domain

  2. XM_010643929.3 → XP_010642231.1  double-stranded RNA-specific adenosine deaminase isoform X4

    UniProtKB/TrEMBL
    A0A091D3X5
    Conserved Domains (3) summary
    smart00358
    Location:458 → 523
    DSRM; Double-stranded RNA binding motif
    smart00552
    Location:765 → 1148
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cl02659
    Location:138 → 203
    z-alpha; Adenosine deaminase z-alpha domain

  3. XM_033758209.1 → XP_033614100.1  double-stranded RNA-specific adenosine deaminase isoform X2

    UniProtKB/TrEMBL
    A0A091D3X5
    Conserved Domains (5) summary
    smart00552
    Location:786 → 1169
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cl02659
    Location:133 → 198
    z-alpha; Adenosine deaminase z-alpha domain
    cd19913
    Location:451 → 521
    DSRM_DRADA_rpt1; first double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA)
    cd19915
    Location:672 → 742
    DSRM_DRADA_rpt3; third double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA) and similar proteins
    cl00054
    Location:562 → 632
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  4. XM_033758208.1 → XP_033614099.1  double-stranded RNA-specific adenosine deaminase isoform X1

    UniProtKB/TrEMBL
    A0A091D3X5
    Conserved Domains (5) summary
    smart00552
    Location:791 → 1174
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cl02659
    Location:138 → 203
    z-alpha; Adenosine deaminase z-alpha domain
    cd19913
    Location:456 → 526
    DSRM_DRADA_rpt1; first double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA)
    cd19915
    Location:677 → 747
    DSRM_DRADA_rpt3; third double-stranded RNA binding motif of double-stranded RNA-specific adenosine deaminase (DRADA) and similar proteins
    cl00054
    Location:567 → 637
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  5. XM_010643928.3 → XP_010642230.1  double-stranded RNA-specific adenosine deaminase isoform X3

    UniProtKB/TrEMBL
    A0A091D3X5
    Related
    ENSFDAP00000007613.1
    Conserved Domains (3) summary
    smart00358
    Location:433 → 498
    DSRM; Double-stranded RNA binding motif
    smart00552
    Location:766 → 1149
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cl02659
    Location:113 → 178
    z-alpha; Adenosine deaminase z-alpha domain
Nucleotide Protein
Heading Accession and Version

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