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Mrps5 mitochondrial ribosomal protein S5 [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104872003, updated on 12-Mar-2024

Summary

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Gene symbol
Mrps5
Gene description
mitochondrial ribosomal protein S5
Locus tag
H920_11252
See related
Ensembl:ENSFDAG00000004115
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Mrps5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900921.1 (40810191..40834954, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011045538.1 (1268140..1292821)

NW_022900921.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104872004 Neighboring gene mal, T cell differentiation protein Neighboring gene uncharacterized LOC117285382 Neighboring gene U6 spliceosomal RNA Neighboring gene zinc finger protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
28S ribosomal protein S5, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900921.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    40810191..40834954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033761687.1 → XP_033617578.1  28S ribosomal protein S5, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A091DAR7
    Conserved Domains (1) summary
    COG0098
    Location:215 → 367
    RpsE; Ribosomal protein S5 [Translation, ribosomal structure and biogenesis]

  2. XM_010638161.3 → XP_010636463.1  28S ribosomal protein S5, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A091DAR7
    Related
    ENSFDAP00000015933.1
    Conserved Domains (3) summary
    TIGR01021
    Location:218 → 373
    rpsE_bact; ribosomal protein S5, bacterial/organelle type
    pfam00333
    Location:219 → 284
    Ribosomal_S5; Ribosomal protein S5, N-terminal domain
    pfam03719
    Location:298 → 366
    Ribosomal_S5_C; Ribosomal protein S5, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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