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Adarb2 adenosine deaminase RNA specific B2 (inactive) [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104856381, updated on 12-Mar-2024

Summary

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Gene symbol
Adarb2
Gene description
adenosine deaminase RNA specific B2 (inactive)
Locus tag
H920_20108
See related
Ensembl:ENSFDAG00000012339
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
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Genomic context

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See Adarb2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900922.1 (7609662..7834483)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011048005.1 (1643112..1831507, complement)

NW_022900922.1Genomic Context describing neighboring genes Neighboring gene zinc finger CCCH domain-containing protein 14-like Neighboring gene U2 spliceosomal RNA Neighboring gene target of rapamycin complex 2 subunit MAPKAP1-like Neighboring gene proheparin-binding EGF-like growth factor Neighboring gene WD repeat domain 37

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA-specific adenosine deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in adenosine to inosine editing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
double-stranded RNA-specific editase B2
Names
Double-stranded RNA-specific editase B2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900922.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    7609662..7834483
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033761832.1 → XP_033617723.1  double-stranded RNA-specific editase B2 isoform X3

    Conserved Domains (3) summary
    smart00552
    Location:337 → 712
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19896
    Location:92 → 165
    DSRM_RED2_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 2 (RED2) and similar proteins
    cl00054
    Location:246 → 319
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  2. XM_033761829.1 → XP_033617720.1  double-stranded RNA-specific editase B2 isoform X1

    Conserved Domains (3) summary
    smart00552
    Location:337 → 598
    ADEAMc; tRNA-specific and double-stranded RNA adenosine deaminase (RNA-specific editase)
    cd19896
    Location:92 → 165
    DSRM_RED2_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 2 (RED2) and similar proteins
    cl00054
    Location:246 → 319
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily

  3. XM_033761831.1 → XP_033617722.1  double-stranded RNA-specific editase B2 isoform X2

    Conserved Domains (3) summary
    cd19896
    Location:92 → 165
    DSRM_RED2_rpt1; first double-stranded RNA binding motif of RNA-editing deaminase 2 (RED2) and similar proteins
    cl00054
    Location:246 → 319
    DSRM_SF; double-stranded RNA binding motif (DSRM) superfamily
    cl02661
    Location:337 → 576
    A_deamin; Adenosine-deaminase (editase) domain
Nucleotide Protein
Heading Accession and Version

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