U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Son SON DNA and RNA binding protein [ Fukomys damarensis (Damara mole-rat) ]

Gene ID: 104851466, updated on 12-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Son
Gene description
SON DNA and RNA binding protein
See related
Ensembl:ENSFDAG00000019128
Gene type
protein coding
RefSeq status
MODEL
Organism
Fukomys damarensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Bathyergidae; Fukomys
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Son in Genome Data Viewer
Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current DMR_v1.0_HiC (GCF_012274545.1) Unplaced Scaffold NW_022900936.1 (9629597..9661504, complement)
101 previous assembly DMR_v1.0 (GCF_000743615.1) Unplaced Scaffold NW_011046965.1 (11651363..11683159)

NW_022900936.1Genomic Context describing neighboring genes Neighboring gene intersectin 1 Neighboring gene transcription factor BTF3-like Neighboring gene crystallin zeta like 1 Neighboring gene DNA replication fork stabilization factor DONSON Neighboring gene phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase Neighboring gene DnaJ heat shock protein family (Hsp40) member C28 Neighboring gene transmembrane protein 50B Neighboring gene E3 ubiquitin-protein ligase SIAH1-like

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein SON
Names
Protein SON
SON DNA binding protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Fukomys damarensis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference DMR_v1.0_HiC Primary Assembly

Genomic

  1. NW_022900936.1 Reference DMR_v1.0_HiC Primary Assembly

    Range
    9629597..9661504 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010608665.2 → XP_010606967.1  protein SON isoform X1

    See identical proteins and their annotated locations for XP_010606967.1

    UniProtKB/TrEMBL
    A0A091CUD2
    Related
    ENSFDAP00000011600.1
    Conserved Domains (3) summary
    smart00358
    Location:2355 → 2423
    DSRM; Double-stranded RNA binding motif
    pfam08430
    Location:1008 → 1121
    Forkhead_N; Forkhead N-terminal region
    pfam01585
    Location:2288 → 2331
    G-patch; G-patch domain

  2. XM_010608667.3 → XP_010606969.1  protein SON isoform X2

    Conserved Domains (3) summary
    cd00048
    Location:2354 → 2391
    DSRM; Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, ...
    pfam08430
    Location:1008 → 1121
    Forkhead_N; Forkhead N-terminal region
    pfam01585
    Location:2288 → 2331
    G-patch; G-patch domain

  3. XM_010608670.2 → XP_010606972.2  protein SON isoform X3

    Conserved Domains (4) summary
    PHA03307
    Location:377 → 669
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK10811
    Location:1325 → 1489
    rne; ribonuclease E; Reviewed
    NF000535
    Location:722 → 902
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    NF033839
    Location:280 → 451
    PspC_subgroup_2; pneumococcal surface protein PspC, LPXTG-anchored form

  4. XM_010608668.3 → XP_010606970.1  protein SON isoform X4

    Related
    ENSFDAP00000011593.1
    Conserved Domains (1) summary
    pfam08430
    Location:1008 → 1121
    Forkhead_N; Forkhead N-terminal region

  5. XM_010608669.3 → XP_010606971.1  protein SON isoform X5

    Related
    ENSFDAP00000011587.1
    Conserved Domains (1) summary
    pfam08430
    Location:1008 → 1121
    Forkhead_N; Forkhead N-terminal region
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.