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LOC104823157 calcium-dependent protein kinase 1 [ Tarenaya hassleriana ]

Gene ID: 104823157, updated on 18-Sep-2024

Summary

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Gene symbol
LOC104823157
Gene description
calcium-dependent protein kinase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Tarenaya hassleriana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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Genomic context

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See LOC104823157 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010966881.1 (227107..231975, complement)

NW_010966881.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104823154 Neighboring gene nuclear pore complex protein NUP1-like Neighboring gene uncharacterized LOC104823156 Neighboring gene protein SAD1/UNC-84 domain protein 1-like Neighboring gene coatomer subunit delta-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010966881.1 Unplaced Scaffold Reference ASM46358v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autophosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-dependent protein kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM46358v1

Genomic

  1. NW_010966881.1 Reference ASM46358v1

    Range
    227107..231975 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010554587.1 → XP_010552889.1  calcium-dependent protein kinase 1

    See identical proteins and their annotated locations for XP_010552889.1

    Conserved Domains (5) summary
    pfam05887
    Location:30 → 122
    Trypan_PARP; Procyclic acidic repetitive protein (PARP)
    PTZ00184
    Location:445 → 587
    PTZ00184; calmodulin; Provisional
    cd00051
    Location:528 → 588
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    cd05117
    Location:150 → 408
    STKc_CAMK; The catalytic domain of CAMK family Serine/Threonine Kinases
    pfam00069
    Location:151 → 409
    Pkinase; Protein kinase domain
Nucleotide Protein
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