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LOC104817963 homeobox-leucine zipper protein ATHB-15 [ Tarenaya hassleriana ]

Gene ID: 104817963, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104817963
Gene description
homeobox-leucine zipper protein ATHB-15
Gene type
protein coding
RefSeq status
MODEL
Organism
Tarenaya hassleriana
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; New World clade; Tarenaya
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Genomic context

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See LOC104817963 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ASM46358v1 (GCF_000463585.1) Unplaced Scaffold NW_010966021.1 (1639677..1645787, complement)

NW_010966021.1Genomic Context describing neighboring genes Neighboring gene ABC transporter G family member 29 Neighboring gene uncharacterized LOC104817962 Neighboring gene nuclear pore complex protein NUP35 Neighboring gene CASP-like protein 3A1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010966021.1 Unplaced Scaffold Reference ASM46358v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables lipid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein ATHB-15

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tarenaya hassleriana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM46358v1

Genomic

  1. NW_010966021.1 Reference ASM46358v1

    Range
    1639677..1645787 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010547370.2 → XP_010545672.1  homeobox-leucine zipper protein ATHB-15 isoform X1

    See identical proteins and their annotated locations for XP_010545672.1

    Conserved Domains (4) summary
    cd08875
    Location:155 → 371
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cd14686
    Location:69 → 108
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    pfam00046
    Location:17 → 74
    Homeobox; Homeobox domain
    pfam08670
    Location:696 → 834
    MEKHLA; MEKHLA domain

  2. XM_010547369.2 → XP_010545671.1  homeobox-leucine zipper protein ATHB-15 isoform X1

    See identical proteins and their annotated locations for XP_010545671.1

    Conserved Domains (4) summary
    cd08875
    Location:155 → 371
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cd14686
    Location:69 → 108
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    pfam00046
    Location:17 → 74
    Homeobox; Homeobox domain
    pfam08670
    Location:696 → 834
    MEKHLA; MEKHLA domain

  3. XM_010547368.2 → XP_010545670.1  homeobox-leucine zipper protein ATHB-15 isoform X1

    See identical proteins and their annotated locations for XP_010545670.1

    Conserved Domains (4) summary
    cd08875
    Location:155 → 371
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cd14686
    Location:69 → 108
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    pfam00046
    Location:17 → 74
    Homeobox; Homeobox domain
    pfam08670
    Location:696 → 834
    MEKHLA; MEKHLA domain

  4. XM_010547371.2 → XP_010545673.1  homeobox-leucine zipper protein ATHB-15 isoform X2

    Conserved Domains (4) summary
    cd08875
    Location:155 → 371
    START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
    cd14686
    Location:69 → 108
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
    pfam00046
    Location:17 → 74
    Homeobox; Homeobox domain
    pfam08670
    Location:695 → 833
    MEKHLA; MEKHLA domain
Nucleotide Protein
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