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LOC104786917 alpha-L-fucosidase 1 [ Camelina sativa (false flax) ]

Gene ID: 104786917, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104786917
Gene description
alpha-L-fucosidase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104786917 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 5 NC_025689.1 (14784986..14786929, complement)

Chromosome 5 - NC_025689.1Genomic Context describing neighboring genes Neighboring gene probable glucuronoxylan glucuronosyltransferase IRX7 Neighboring gene uncharacterized LOC104786916 Neighboring gene heavy metal-associated isoprenylated plant protein 3-like Neighboring gene indole-3-acetic acid-induced protein ARG7-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025689.1 Chromosome 5 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fucose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycoside catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-L-fucosidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025689.1 Reference Cs

    Range
    14784986..14786929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010512393.2 → XP_010510695.1  alpha-L-fucosidase 1

    Conserved Domains (2) summary
    COG3669
    Location:50 → 487
    AfuC; Alpha-L-fucosidase [Carbohydrate transport and metabolism]
    cl07893
    Location:87 → 346
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
Heading Accession and Version

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