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LOC104779886 alpha-mannosidase At3g26720 [ Camelina sativa (false flax) ]

Gene ID: 104779886, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104779886
Gene description
alpha-mannosidase At3g26720
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104779886 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 4 NC_025688.1 (5500230..5506876)

Chromosome 4 - NC_025688.1Genomic Context describing neighboring genes Neighboring gene alanine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC104783560 Neighboring gene zinc finger BED domain-containing protein DAYSLEEPER-like Neighboring gene RING finger protein 10

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025688.1 Chromosome 4 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-mannosidase At3g26720

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025688.1 Reference Cs

    Range
    5500230..5506876
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010504309.2 → XP_010502611.1  alpha-mannosidase At3g26720

    Conserved Domains (4) summary
    PLN02701
    Location:36 → 1004
    PLN02701; alpha-mannosidase
    cd10810
    Location:38 → 314
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
    smart00872
    Location:356 → 429
    Alpha-mann_mid; Alpha mannosidase, middle domain
    pfam07748
    Location:488 → 999
    Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain
Nucleotide Protein
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