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LOC104735413 probable alpha-mannosidase At5g13980 [ Camelina sativa (false flax) ]

Gene ID: 104735413, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104735413
Gene description
probable alpha-mannosidase At5g13980
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104735413 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 13 NC_025697.1 (5966187..5972659)

Chromosome 13 - NC_025697.1Genomic Context describing neighboring genes Neighboring gene histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 Neighboring gene uncharacterized LOC104735414 Neighboring gene exocyst complex component EXO70B1-like Neighboring gene NAC domain-containing protein 83-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025697.1 Chromosome 13 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha-mannosidase At5g13980

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025697.1 Reference Cs

    Range
    5966187..5972659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010455201.2 → XP_010453503.1  probable alpha-mannosidase At5g13980

    Conserved Domains (3) summary
    cd10810
    Location:37 → 313
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
    smart00872
    Location:356 → 429
    Alpha-mann_mid; Alpha mannosidase, middle domain
    pfam07748
    Location:590 → 1006
    Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain
Nucleotide Protein
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