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LOC104734546 cytosolic endo-beta-N-acetylglucosaminidase 1-like [ Camelina sativa (false flax) ]

Gene ID: 104734546, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104734546
Gene description
cytosolic endo-beta-N-acetylglucosaminidase 1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104734546 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 13 NC_025697.1 (2073793..2077182)

Chromosome 13 - NC_025697.1Genomic Context describing neighboring genes Neighboring gene abscisic acid receptor PYL5 Neighboring gene DEAD-box ATP-dependent RNA helicase 18 Neighboring gene eukaryotic translation initiation factor 2 subunit alpha Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like Neighboring gene sister chromatid cohesion 1 protein 1-like Neighboring gene uncharacterized LOC109128491

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025697.1 Chromosome 13 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deglycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic endo-beta-N-acetylglucosaminidase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025697.1 Reference Cs

    Range
    2073793..2077182
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010454146.2 → XP_010452448.1  cytosolic endo-beta-N-acetylglucosaminidase 1-like

    Conserved Domains (1) summary
    cd06547
    Location:71 → 388
    GH85_ENGase; Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the ...
Nucleotide Protein
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