U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC104734188 ATPase 3, plasma membrane-type [ Camelina sativa (false flax) ]

Gene ID: 104734188, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC104734188
Gene description
ATPase 3, plasma membrane-type
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC104734188 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 2 NC_025686.1 (23596834..23602411, complement)

Chromosome 2 - NC_025686.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein gacU Neighboring gene uncharacterized LOC104734177 Neighboring gene adagio protein 1 Neighboring gene U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein Neighboring gene protein VERNALIZATION INSENSITIVE 3

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_025686.1 Chromosome 2 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo assembly and characterization of Camelina sativa transcriptome by paired-end sequencing. Liang C, et al. BMC Genomics, 2013 Mar 5. PMID 23496985, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables P-type proton-exporting transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proton export across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of intracellular pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ATPase 3, plasma membrane-type

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025686.1 Reference Cs

    Range
    23596834..23602411 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019236966.1 → XP_019092511.1  ATPase 3, plasma membrane-type

  2. XM_010453716.2 → XP_010452018.1  ATPase 3, plasma membrane-type

    Conserved Domains (5) summary
    smart00831
    Location:14 → 75
    Cation_ATPase_N; Cation transporter/ATPase, N-terminus
    COG4087
    Location:535 → 632
    COG4087; Soluble P-type ATPase [General function prediction only]
    TIGR01647
    Location:33 → 805
    ATPase-IIIA_H; plasma-membrane proton-efflux P-type ATPase
    pfam00122
    Location:98 → 319
    E1-E2_ATPase; E1-E2 ATPase
    pfam13246
    Location:377 → 434
    Cation_ATPase; Cation transport ATPase (P-type)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases