U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC104729804 alpha-L-fucosidase 2-like [ Camelina sativa (false flax) ]

Gene ID: 104729804, updated on 9-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC104729804
Gene description
alpha-L-fucosidase 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC104729804 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 12 NC_025696.1 (3063505..3067351, complement)

Chromosome 12 - NC_025696.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104729802 Neighboring gene putative F-box protein At1g32140 Neighboring gene 3-ketoacyl-CoA synthase 16-like Neighboring gene aldehyde dehydrogenase family 3 member I1, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_025696.1 Chromosome 12 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. Mudalkar S, et al. Plant Mol Biol, 2014 Jan. PMID 24002439
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-L-fucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-L-fucosidase 2-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025696.1 Reference Cs

    Range
    3063505..3067351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010448812.1 → XP_010447114.1  alpha-L-fucosidase 2-like

    Conserved Domains (1) summary
    pfam14498
    Location:44 → 299
    Glyco_hyd_65N_2; Glycosyl hydrolase family 65, N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases