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LOC104710475 alpha-mannosidase At3g26720-like [ Camelina sativa (false flax) ]

Gene ID: 104710475, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104710475
Gene description
alpha-mannosidase At3g26720-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104710475 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
29
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 9 NC_025693.1 (4569016..4575957)

Chromosome 9 - NC_025693.1Genomic Context describing neighboring genes Neighboring gene protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB1, chloroplastic-like Neighboring gene alanine--tRNA ligase, chloroplastic/mitochondrial-like Neighboring gene RING finger protein 10 Neighboring gene uncharacterized LOC104710478

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025693.1 Chromosome 9 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. Mudalkar S, et al. Plant Mol Biol, 2014 Jan. PMID 24002439
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-mannosidase At3g26720-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025693.1 Reference Cs

    Range
    4569016..4575957
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010427088.2 → XP_010425390.1  alpha-mannosidase At3g26720-like

    Conserved Domains (4) summary
    PLN02701
    Location:37 → 1005
    PLN02701; alpha-mannosidase
    cd10810
    Location:39 → 315
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
    smart00872
    Location:357 → 430
    Alpha-mann_mid; Alpha mannosidase, middle domain
    pfam07748
    Location:489 → 1000
    Glyco_hydro_38C; Glycosyl hydrolases family 38 C-terminal domain
Nucleotide Protein
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