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LOC104708570 cytosolic endo-beta-N-acetylglucosaminidase 1 [ Camelina sativa (false flax) ]

Gene ID: 104708570, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104708570
Gene description
cytosolic endo-beta-N-acetylglucosaminidase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Camelina sativa
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Genomic context

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See LOC104708570 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
101 current Cs (GCF_000633955.1) 8 NC_025692.1 (25414619..25418073, complement)

Chromosome 8 - NC_025692.1Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion 1 protein 1 Neighboring gene peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A-like Neighboring gene eukaryotic translation initiation factor 2 subunit alpha-like Neighboring gene DEAD-box ATP-dependent RNA helicase 18-like Neighboring gene abscisic acid receptor PYL5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_025692.1 Chromosome 8 Reference Cs

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome analysis of an imminent biofuel crop, Camelina sativa L. using Illumina GAIIX sequencing platform and identification of SSR markers. Mudalkar S, et al. Plant Mol Biol, 2014 Jan. PMID 24002439
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deglycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytosolic endo-beta-N-acetylglucosaminidase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Camelina sativa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Cs

Genomic

  1. NC_025692.1 Reference Cs

    Range
    25414619..25418073 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010425168.2 → XP_010423470.1  cytosolic endo-beta-N-acetylglucosaminidase 1

    Conserved Domains (1) summary
    cd06547
    Location:73 → 392
    GH85_ENGase; Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the ...
Nucleotide Protein
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