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SRSF6 serine and arginine rich splicing factor 6 [ Corvus cornix cornix ]

Gene ID: 104698034, updated on 3-Aug-2024

Summary

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Gene symbol
SRSF6
Gene description
serine and arginine rich splicing factor 6
See related
EnsemblRapid:ENSCCCG00025010521
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 20
Exon count:
6
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 20 NC_046349.1 (1260162..1264835)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010958925.1 (1262140..1265985)

Chromosome 20 - NC_046349.1Genomic Context describing neighboring genes Neighboring gene AAR2 splicing factor Neighboring gene erythrocyte membrane protein band 4.1 like 1 Neighboring gene L3MBTL histone methyl-lysine binding protein 1 Neighboring gene immunoglobulin superfamily member 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splice site recognition IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046349.1 Reference ASM73873v5 Primary Assembly

    Range
    1260162..1264835
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039563512.1 → XP_039419446.1  serine/arginine-rich splicing factor 6

    Related
    ENSCCCP00025018175.1, ENSCCCT00025021600.1
    Conserved Domains (2) summary
    cd12596
    Location:1 → 72
    RRM1_SRSF6; RNA recognition motif 1 (RRM1) found in vertebrate serine/arginine-rich splicing factor 6 (SRSF6)
    cd12600
    Location:111 → 182
    RRM2_SRSF4_like; RNA recognition motif 2 (RRM2) found in serine/arginine-rich splicing factor 4 (SRSF4) and similar proteins
Nucleotide Protein
Heading Accession and Version

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