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HNRNPM heterogeneous nuclear ribonucleoprotein M [ Corvus cornix cornix ]

Gene ID: 104697370, updated on 3-Aug-2024

Summary

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Gene symbol
HNRNPM
Gene description
heterogeneous nuclear ribonucleoprotein M
See related
EnsemblRapid:ENSCCCG00025014431
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See HNRNPM in Genome Data Viewer
Location:
chromosome: 28
Exon count:
16
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 28 NC_046356.1 (4413797..4432618, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010960085.1 (843529..860180)

Chromosome 28 - NC_046356.1Genomic Context describing neighboring genes Neighboring gene cortexin 1 Neighboring gene translocase of inner mitochondrial membrane 44 Neighboring gene YJU2 splicing factor homolog Neighboring gene Src homology 2 domain containing transforming protein D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA stability involved in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein M

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046356.1 Reference ASM73873v5 Primary Assembly

    Range
    4413797..4432618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039566188.1 → XP_039422122.1  heterogeneous nuclear ribonucleoprotein M isoform X4

    Related
    ENSCCCP00025024996.1, ENSCCCT00025029841.1
    Conserved Domains (5) summary
    pfam11532
    Location:1 → 17
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:19 → 94
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:152 → 227
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:609 → 685
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:294 → 486
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  2. XM_039566186.1 → XP_039422120.1  heterogeneous nuclear ribonucleoprotein M isoform X2

    Conserved Domains (5) summary
    pfam11532
    Location:1 → 17
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:19 → 94
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:152 → 227
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:608 → 684
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:293 → 485
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  3. XM_039566185.1 → XP_039422119.1  heterogeneous nuclear ribonucleoprotein M isoform X1

    Related
    ENSCCCP00025025007.1, ENSCCCT00025029856.1
    Conserved Domains (5) summary
    pfam11532
    Location:1 → 17
    HnRNP_M; Heterogeneous nuclear ribonucleoprotein M
    cd12657
    Location:19 → 94
    RRM1_hnRNPM; RNA recognition motif 1 (RRM1) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12659
    Location:152 → 227
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:575 → 651
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:260 → 452
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA

  4. XM_039566187.1 → XP_039422121.1  heterogeneous nuclear ribonucleoprotein M isoform X3

    Conserved Domains (4) summary
    cd12659
    Location:85 → 160
    RRM2_hnRNPM; RNA recognition motif 2 (RRM2) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    cd12661
    Location:542 → 618
    RRM3_hnRNPM; RNA recognition motif 3 (RRM3) found in vertebrate heterogeneous nuclear ribonucleoprotein M (hnRNP M)
    NF033916
    Location:227 → 419
    antiphage_ZorA_3; anti-phage defense ZorAB system ZorA
    cl17169
    Location:1 → 27
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
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