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LSM7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated [ Corvus cornix cornix ]

Gene ID: 104696970, updated on 3-Aug-2024

Summary

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Gene symbol
LSM7
Gene description
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated
See related
EnsemblRapid:ENSCCCG00025012266
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See LSM7 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
5
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 28 NC_046356.1 (302706..307820)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010960062.1 (1508443..1513253, complement)

Chromosome 28 - NC_046356.1Genomic Context describing neighboring genes Neighboring gene transmembrane serine protease 9 Neighboring gene signal peptide peptidase like 2B Neighboring gene kelch-like protein 24 Neighboring gene ceramide synthase 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U6 snRNA-associated Sm-like protein LSm7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046356.1 Reference ASM73873v5 Primary Assembly

    Range
    302706..307820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039566374.1 → XP_039422308.1  U6 snRNA-associated Sm-like protein LSm7 isoform X1

    Related
    ENSCCCP00025021225.1, ENSCCCT00025025218.1
    Conserved Domains (1) summary
    cl00259
    Location:23 → 86
    Sm_like; Sm and related proteins

  2. XM_039566375.1 → XP_039422309.1  U6 snRNA-associated Sm-like protein LSm7 isoform X2

    Conserved Domains (1) summary
    cl00259
    Location:23 → 80
    Sm_like; Sm and related proteins

  3. XM_039566376.1 → XP_039422310.1  U6 snRNA-associated Sm-like protein LSm7 isoform X3

    Related
    ENSCCCP00025021231.1, ENSCCCT00025025226.1
    Conserved Domains (1) summary
    cd01729
    Location:23 → 109
    LSm7; Like-Sm protein 7
Nucleotide Protein
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