U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

THOC2 THO complex 2 [ Corvus cornix cornix ]

Gene ID: 104694478, updated on 3-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
THOC2
Gene description
THO complex 2
See related
EnsemblRapid:ENSCCCG00025008903
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See THOC2 in Genome Data Viewer
Location:
chromosome: 4A
Exon count:
39
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 4A NC_047058.1 (10410490..10461008, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959772.1 (2448854..2493677, complement)

Chromosome 4A - NC_047058.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC109145728 Neighboring gene glutamate ionotropic receptor AMPA type subunit 3 Neighboring gene X-linked inhibitor of apoptosis Neighboring gene STAG2 cohesin complex component

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
THO complex subunit 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_047058.1 Reference ASM73873v5 Primary Assembly

    Range
    10410490..10461008 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039571795.1 → XP_039427729.1  THO complex subunit 2 isoform X3

    Conserved Domains (5) summary
    PTZ00121
    Location:1303 → 1548
    PTZ00121; MAEBL; Provisional
    TIGR01642
    Location:1449 → 1546
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11262
    Location:870 → 1169
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam11732
    Location:564 → 638
    Thoc2; Transcription- and export-related complex subunit
    pfam16134
    Location:8 → 562
    THOC2_N; THO complex subunit 2 N-terminus

  2. XM_039571793.1 → XP_039427727.1  THO complex subunit 2 isoform X1

    Conserved Domains (5) summary
    PTZ00121
    Location:1294 → 1620
    PTZ00121; MAEBL; Provisional
    TIGR01642
    Location:1476 → 1573
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11262
    Location:870 → 1169
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam11732
    Location:564 → 638
    Thoc2; Transcription- and export-related complex subunit
    pfam16134
    Location:8 → 562
    THOC2_N; THO complex subunit 2 N-terminus

  3. XM_039571794.1 → XP_039427728.1  THO complex subunit 2 isoform X2

    Related
    ENSCCCP00025015580.1, ENSCCCT00025018394.1
    Conserved Domains (5) summary
    PTZ00121
    Location:1305 → 1549
    PTZ00121; MAEBL; Provisional
    TIGR01642
    Location:1450 → 1547
    U2AF_lg; U2 snRNP auxilliary factor, large subunit, splicing factor
    pfam11262
    Location:870 → 1169
    Tho2; Transcription factor/nuclear export subunit protein 2
    pfam11732
    Location:564 → 638
    Thoc2; Transcription- and export-related complex subunit
    pfam16134
    Location:8 → 562
    THOC2_N; THO complex subunit 2 N-terminus
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.