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SDC2 syndecan 2 [ Corvus cornix cornix ]

Gene ID: 104692894, updated on 3-Aug-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
EnsemblRapid:ENSCCCG00025004569
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 2 NC_046333.1 (131373653..131433834)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959651.1 (22324460..22341850, complement)

Chromosome 2 - NC_046333.1Genomic Context describing neighboring genes Neighboring gene phosphatidylserine synthase 1 Neighboring gene uncharacterized LOC109145323 Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC120409681 Neighboring gene metadherin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046333.1 Reference ASM73873v5 Primary Assembly

    Range
    131373653..131433834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039549172.1 → XP_039405106.1  syndecan-2

    Related
    ENSCCCP00025008409.1, ENSCCCT00025009469.1
    Conserved Domains (1) summary
    pfam01034
    Location:138 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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