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SC5D sterol-C5-desaturase [ Corvus cornix cornix ]

Gene ID: 104692196, updated on 3-Aug-2024

Summary

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Gene symbol
SC5D
Gene description
sterol-C5-desaturase
See related
EnsemblRapid:ENSCCCG00025009662
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See SC5D in Genome Data Viewer
Location:
chromosome: 24
Exon count:
5
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 24 NC_046353.1 (2704708..2708178)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959618.1 (2708417..2710998)

Chromosome 24 - NC_046353.1Genomic Context describing neighboring genes Neighboring gene tectorin alpha Neighboring gene uncharacterized LOC109145225 Neighboring gene uncharacterized LOC104692108 Neighboring gene sortilin related receptor 1 Neighboring gene uncharacterized LOC120411242 Neighboring gene uncharacterized LOC104692110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cholesterol biosynthetic process via lathosterol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lathosterol oxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046353.1 Reference ASM73873v5 Primary Assembly

    Range
    2704708..2708178
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039564986.1 → XP_039420920.1  lathosterol oxidase

    Related
    ENSCCCP00025016750.1, ENSCCCT00025019889.1
    Conserved Domains (1) summary
    COG3000
    Location:31 → 259
    ERG3; Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily [Lipid transport and metabolism]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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