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TBPL1 TATA-box binding protein like 1 [ Corvus cornix cornix ]

Gene ID: 104690487, updated on 3-Aug-2024

Summary

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Gene symbol
TBPL1
Gene description
TATA-box binding protein like 1
See related
EnsemblRapid:ENSCCCG00025004599
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See TBPL1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 3 NC_047056.1 (58364324..58378644, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010958890.1 (12732989..12746668, complement)

Chromosome 3 - NC_047056.1Genomic Context describing neighboring genes Neighboring gene serum/glucocorticoid regulated kinase 1 Neighboring gene solute carrier family 2 member 12 Neighboring gene uncharacterized LOC120411805 Neighboring gene transcription factor 21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables general transcription initiation factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription initiation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TATA box-binding protein-like 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_047056.1 Reference ASM73873v5 Primary Assembly

    Range
    58364324..58378644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039568847.1 → XP_039424781.1  TATA box-binding protein-like 1

    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

  2. XM_039568848.1 → XP_039424782.1  TATA box-binding protein-like 1

    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

  3. XM_010401366.4 → XP_010399668.1  TATA box-binding protein-like 1

    See identical proteins and their annotated locations for XP_010399668.1

    Related
    ENSCCCP00025008470.1, ENSCCCT00025009531.1
    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

  4. XM_010401360.4 → XP_010399662.1  TATA box-binding protein-like 1

    See identical proteins and their annotated locations for XP_010399662.1

    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...

  5. XM_010401351.4 → XP_010399653.1  TATA box-binding protein-like 1

    See identical proteins and their annotated locations for XP_010399653.1

    Conserved Domains (1) summary
    cd04517
    Location:9 → 180
    TLF; TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the ...
Nucleotide Protein
Heading Accession and Version

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