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ST6GALNAC6 ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [ Corvus cornix cornix ]

Gene ID: 104688450, updated on 3-Aug-2024

Summary

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Gene symbol
ST6GALNAC6
Gene description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
See related
EnsemblRapid:ENSCCCG00025003827
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See ST6GALNAC6 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 17 NC_046346.1 (6053460..6057586, complement)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959408.1 (4992577..4998781)

Chromosome 17 - NC_046346.1Genomic Context describing neighboring genes Neighboring gene folylpolyglutamate synthase Neighboring gene endoglin Neighboring gene adenylate kinase 1 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 Neighboring gene uncharacterized LOC120410898 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 2, regulatory Neighboring gene estrogen-induced osteoclastogenesis regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ganglioside biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046346.1 Reference ASM73873v5 Primary Assembly

    Range
    6053460..6057586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039561587.1 → XP_039417521.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_039561586.1 → XP_039417520.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_039561584.1 → XP_039417518.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  4. XM_039561582.1 → XP_039417516.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  5. XM_039561583.1 → XP_039417517.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  6. XM_039561585.1 → XP_039417519.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  7. XM_039561588.1 → XP_039417522.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6

    Related
    ENSCCCP00025007051.1, ENSCCCT00025007819.1
    Conserved Domains (1) summary
    pfam00777
    Location:70 → 261
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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