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B3GNT5 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 [ Corvus cornix cornix ]

Gene ID: 104687996, updated on 3-Aug-2024

Summary

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Gene symbol
B3GNT5
Gene description
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
See related
EnsemblRapid:ENSCCCG00025008531
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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See B3GNT5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
6
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 9 NC_046339.1 (8251325..8271340)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959397.1 (3640794..3659061, complement)

Chromosome 9 - NC_046339.1Genomic Context describing neighboring genes Neighboring gene methylcrotonyl-CoA carboxylase subunit 1 Neighboring gene lysosomal associated membrane protein 3 Neighboring gene MCF.2 cell line derived transforming sequence-like 2 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene replication factor C subunit 4 Neighboring gene eukaryotic translation initiation factor 4A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_046339.1 Reference ASM73873v5 Primary Assembly

    Range
    8251325..8271340
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039557267.1 → XP_039413201.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase

  2. XM_039557266.1 → XP_039413200.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase

  3. XM_039557263.1 → XP_039413197.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    Related
    ENSCCCP00025015045.1, ENSCCCT00025017715.1
    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase

  4. XM_039557268.1 → XP_039413202.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X2

  5. XM_039557265.1 → XP_039413199.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    Related
    ENSCCCP00025015040.1, ENSCCCT00025017710.1
    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase

  6. XM_039557264.1 → XP_039413198.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    Related
    ENSCCCP00025015037.1, ENSCCCT00025017707.1
    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase

  7. XM_019284641.2 → XP_019140186.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    Related
    ENSCCCP00025015009.1, ENSCCCT00025017675.1
    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase

  8. XM_010397297.4 → XP_010395599.1  lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase isoform X1

    See identical proteins and their annotated locations for XP_010395599.1

    Related
    ENSCCCP00025015024.1, ENSCCCT00025017694.1
    Conserved Domains (1) summary
    cl21608
    Location:102 → 298
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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