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COLEC11 collectin subfamily member 11 [ Corvus cornix cornix ]

Gene ID: 104685461, updated on 3-Aug-2024

Summary

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Gene symbol
COLEC11
Gene description
collectin subfamily member 11
See related
EnsemblRapid:ENSCCCG00025003623
Gene type
protein coding
RefSeq status
MODEL
Organism
Corvus cornix cornix (sub-species: cornix)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Corvoidea; Corvidae; Corvus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
104 current ASM73873v5 (GCF_000738735.5) 3 NC_047056.1 (97202396..97251980)
101 previous assembly Hooded_Crow_genome (GCF_000738735.1) Unplaced Scaffold NW_010959286.1 (14654659..14703851, complement)

Chromosome 3 - NC_047056.1Genomic Context describing neighboring genes Neighboring gene ribonuclease H1 Neighboring gene acireductone dioxygenase 1 Neighboring gene ribosomal protein S7 Neighboring gene uncharacterized LOC109143745 Neighboring gene uncharacterized LOC109143735

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collectin-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Corvus cornix cornix Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM73873v5 Primary Assembly

Genomic

  1. NC_047056.1 Reference ASM73873v5 Primary Assembly

    Range
    97202396..97251980
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010393347.4 → XP_010391649.1  collectin-11 isoform X1

    See identical proteins and their annotated locations for XP_010391649.1

    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:47 → 98
    Collagen; Collagen triple helix repeat (20 copies)

  2. XM_019282163.3 → XP_019137708.1  collectin-11 isoform X1

    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:47 → 98
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_019282162.3 → XP_019137707.1  collectin-11 isoform X1

    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:47 → 98
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_010393345.4 → XP_010391647.1  collectin-11 isoform X1

    See identical proteins and their annotated locations for XP_010391647.1

    Related
    ENSCCCP00025006658.1, ENSCCCT00025007364.1
    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:47 → 98
    Collagen; Collagen triple helix repeat (20 copies)

  5. XM_010393348.4 → XP_010391650.1  collectin-11 isoform X2

    See identical proteins and their annotated locations for XP_010391650.1

    Related
    ENSCCCP00025006668.1, ENSCCCT00025007375.1
    Conserved Domains (2) summary
    cd03591
    Location:151 → 266
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:47 → 98
    Collagen; Collagen triple helix repeat (20 copies)

  6. XM_019282164.3 → XP_019137709.1  collectin-11 isoform X1

    Conserved Domains (2) summary
    cd03591
    Location:157 → 272
    CLECT_collectin_like; C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1)
    pfam01391
    Location:47 → 98
    Collagen; Collagen triple helix repeat (20 copies)
Nucleotide Protein
Heading Accession and Version

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