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SKIC2 SKI2 subunit of superkiller complex [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104678120, updated on 12-Mar-2024

Summary

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Gene symbol
SKIC2
Gene description
SKI2 subunit of superkiller complex
See related
Ensembl:ENSRROG00000036429
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Also known as
SKIV2L
Orthologs
human mouse all
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Genomic context

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See SKIC2 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
28
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 4 NC_044552.1 (25559421..25570346)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010826404.1 (34900..46407, complement)

Chromosome 4 - NC_044552.1Genomic Context describing neighboring genes Neighboring gene complement factor B Neighboring gene negative elongation factor complex member E Neighboring gene serine/threonine kinase 19 Neighboring gene decapping exoribonuclease Neighboring gene complement C4A (Chido/Rodgers blood group)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
helicase SKI2W
Names
Ski2 like RNA helicase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044552.1 Reference ASM756505v1 Primary Assembly

    Range
    25559421..25570346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010383324.2 → XP_010381626.1  helicase SKI2W isoform X1

    UniProtKB/TrEMBL
    A0A2K6Q9E2, A0A2K6Q9G9
    Related
    ENSRROP00000025395.1
    Conserved Domains (2) summary
    COG4581
    Location:291 → 1244
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    pfam17911
    Location:79 → 206
    Ski2_N; Ski2 N-terminal region

  2. XM_010383325.2 → XP_010381627.1  helicase SKI2W isoform X2

    UniProtKB/TrEMBL
    A0A2K6Q9G9
    Conserved Domains (3) summary
    COG4581
    Location:291 → 881
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    pfam13234
    Location:763 → 1023
    rRNA_proc-arch; rRNA-processing arch domain
    pfam17911
    Location:79 → 206
    Ski2_N; Ski2 N-terminal region

RNA

  1. XR_004056720.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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