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SDC2 syndecan 2 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104671568, updated on 12-Mar-2024

Summary

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Gene symbol
SDC2
Gene description
syndecan 2
See related
Ensembl:ENSRROG00000033077
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See SDC2 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 9 NC_044557.1 (60372200..60494735)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010817416.1 (609914..731679)

Chromosome 9 - NC_044557.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104671567 Neighboring gene U6 spliceosomal RNA Neighboring gene carboxypeptidase Q Neighboring gene uncharacterized LOC115899642 Neighboring gene TSPY like 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dendrite morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syndecan-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044557.1 Reference ASM756505v1 Primary Assembly

    Range
    60372200..60494735
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010375077.2 → XP_010373379.1  syndecan-2

    UniProtKB/TrEMBL
    A0A2K6PN90, A0A2K6PND3
    Related
    ENSRROP00000017999.1
    Conserved Domains (1) summary
    pfam01034
    Location:138 → 199
    Syndecan; Syndecan domain
Nucleotide Protein
Heading Accession and Version

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