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DDX39B DExD-box helicase 39B [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104661907, updated on 12-Mar-2024

Summary

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Gene symbol
DDX39B
Gene description
DExD-box helicase 39B
See related
Ensembl:ENSRROG00000039517
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See DDX39B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 4 NC_044552.1 (25086565..25099024, complement)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010798269.1 (71618..84050, complement)

Chromosome 4 - NC_044552.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115896842 Neighboring gene MHC class I polypeptide-related sequence B Neighboring gene small nucleolar RNA SNORD83 Neighboring gene mitochondrial coiled-coil domain 1 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene NFKB inhibitor like 1 Neighboring gene 2-iminobutanoate/2-iminopropanoate deaminase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spliceosome RNA helicase DDX39B
Names
DEAD-box helicase 39B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044552.1 Reference ASM756505v1 Primary Assembly

    Range
    25086565..25099024 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010362738.2 → XP_010361040.1  spliceosome RNA helicase DDX39B

    See identical proteins and their annotated locations for XP_010361040.1

    UniProtKB/TrEMBL
    A0A2K6QSB9, A0A2K6QSC1
    Related
    ENSRROP00000031671.1
    Conserved Domains (2) summary
    cd18787
    Location:262 → 391
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17950
    Location:44 → 251
    DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39

  2. XM_030929327.1 → XP_030785187.1  spliceosome RNA helicase DDX39B

    UniProtKB/TrEMBL
    A0A2K6QSB9, A0A2K6QSC1
    Conserved Domains (2) summary
    cd18787
    Location:262 → 391
    SF2_C_DEAD; C-terminal helicase domain of the DEAD box helicases
    cd17950
    Location:44 → 251
    DEADc_DDX39; DEAD-box helicase domain of DEAD box protein 39
Nucleotide Protein
Heading Accession and Version

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