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SMARCA5 SNF2 related chromatin remodeling ATPase 5 [ Rhinopithecus roxellana (golden snub-nosed monkey) ]

Gene ID: 104657017, updated on 20-Sep-2024

Summary

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Gene symbol
SMARCA5
Gene description
SNF2 related chromatin remodeling ATPase 5
See related
Ensembl:ENSRROG00000029591
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhinopithecus roxellana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Rhinopithecus
Orthologs
human mouse all
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Genomic context

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See SMARCA5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
24
Annotation release Status Assembly Chr Location
101 current ASM756505v1 (GCF_007565055.1) 2 NC_044550.1 (80479053..80520387)
100 previous assembly Rrox_v1 (GCF_000769185.1) Unplaced Scaffold NW_010830157.1 (502410..543720)

Chromosome 2 - NC_044550.1Genomic Context describing neighboring genes Neighboring gene GRB2 associated binding protein 1 Neighboring gene uncharacterized LOC104657015 Neighboring gene 40S ribosomal protein SA-like Neighboring gene putative inactive beta-glucuronidase protein GUSBP11 Neighboring gene FRAS1 related extracellular matrix 3 Neighboring gene gap junction alpha-1 protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleosome binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleosome organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5
Names
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Rhinopithecus roxellana Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM756505v1 Primary Assembly

Genomic

  1. NC_044550.1 Reference ASM756505v1 Primary Assembly

    Range
    80479053..80520387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010356729.2 → XP_010355031.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1

    UniProtKB/TrEMBL
    A0A2K6P1G9
    Related
    ENSRROP00000010363.1
    Conserved Domains (1) summary
    PLN03142
    Location:58 → 1013
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional

  2. XM_010356730.2 → XP_010355032.1  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X2

    UniProtKB/TrEMBL
    A0A2K6P1G9
    Conserved Domains (1) summary
    PLN03142
    Location:69 → 1012
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
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Gene LinkOut

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