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SGPP2 sphingosine-1-phosphate phosphatase 2 [ Balearica regulorum gibbericeps (East African grey crowned-crane) ]

Gene ID: 104642251, updated on 3-Aug-2024

Summary

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Gene symbol
SGPP2
Gene description
sphingosine-1-phosphate phosphatase 2
Locus tag
N312_06357
Gene type
protein coding
RefSeq status
MODEL
Organism
Balearica regulorum gibbericeps (sub-species: gibbericeps)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Gruiformes; Gruidae; Balearica
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SGPP2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current ASM70989v1 (GCF_000709895.1) Unplaced Scaffold NW_010778235.1 (362..9016, complement)

NW_010778235.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010778235.1 Unplaced Scaffold Reference ASM70989v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingosine-1-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine-1-phosphate phosphatase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Balearica regulorum gibbericeps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70989v1 Primary Assembly

Genomic

  1. NW_010778235.1 Reference ASM70989v1 Primary Assembly

    Range
    362..9016 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010311170.1 → XP_010309472.1  sphingosine-1-phosphate phosphatase 2

    See identical proteins and their annotated locations for XP_010309472.1

    UniProtKB/TrEMBL
    A0A087VRG1
    Conserved Domains (2) summary
    COG0671
    Location:27 → 118
    PgpB; Membrane-associated phospholipid phosphatase [Lipid transport and metabolism]
    cl00474
    Location:1 → 107
    PAP2_like; PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid ...
Nucleotide Protein
Heading Accession and Version

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