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ASPH aspartate beta-hydroxylase [ Phaethon lepturus (White-tailed tropicbird) ]

Gene ID: 104624372, updated on 3-Aug-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Locus tag
N335_14483
Gene type
protein coding
RefSeq status
MODEL
Organism
Phaethon lepturus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Phaethontimorphae; Phaethontiformes; Phaethontidae; Phaethon
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
27
Annotation release Status Assembly Chr Location
100 current ASM68728v1 (GCF_000687285.1) Unplaced Scaffold NW_010514015.1 (10080..105603, complement)

NW_010514015.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010514015.1 Unplaced Scaffold Reference ASM68728v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
Names
Aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Phaethon lepturus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM68728v1

Genomic

  1. NW_010514015.1 Reference ASM68728v1

    Range
    10080..105603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010291727.1 → XP_010290029.1  aspartyl/asparaginyl beta-hydroxylase

    UniProtKB/TrEMBL
    A0A091U6M3
    Conserved Domains (4) summary
    TIGR02795
    Location:359 → 472
    tol_pal_ybgF; tol-pal system protein YbgF
    pfam05279
    Location:20 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    sd00006
    Location:475 → 499
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:608 → 761
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
Heading Accession and Version

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