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LOC104609702 3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like [ Nelumbo nucifera (sacred lotus) ]

Gene ID: 104609702, updated on 25-Apr-2024

Summary

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Gene symbol
LOC104609702
Gene description
3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Nelumbo nucifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
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Genomic context

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See LOC104609702 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729161.1 (1152070..1154511)

NW_010729161.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104609701 Neighboring gene uncharacterized mitochondrial protein AtMg00820-like Neighboring gene anthocyanin 5-aromatic acyltransferase-like Neighboring gene probable E3 ubiquitin-protein ligase RHC1A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010729161.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chinese Lotus 1.1 Primary Assembly

Genomic

  1. NW_010729161.1 Reference Chinese Lotus 1.1 Primary Assembly

    Range
    1152070..1154511
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010276073.1 → XP_010274375.1  3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase-like

    UniProtKB/TrEMBL
    A0A1U8BDG1, A0A822XZY7
    Conserved Domains (2) summary
    pfam08100
    Location:44 → 90
    Dimerization; Dimerization domain
    cl17173
    Location:134 → 266
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases