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LOC104609662 acetolactate synthase 3, chloroplastic [ Nelumbo nucifera (sacred lotus) ]

Gene ID: 104609662, updated on 18-Sep-2024

Summary

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Gene symbol
LOC104609662
Gene description
acetolactate synthase 3, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Nelumbo nucifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
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Genomic context

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See LOC104609662 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729161.1 (1544307..1547046)

NW_010729161.1Genomic Context describing neighboring genes Neighboring gene 50S ribosomal protein L13-like Neighboring gene uncharacterized LOC104609661 Neighboring gene threonine--tRNA ligase, mitochondrial 1-like Neighboring gene uncharacterized LOC109115590

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010729161.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetolactate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-valine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in isoleucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of acetolactate synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acetolactate synthase 3, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chinese Lotus 1.1 Primary Assembly

Genomic

  1. NW_010729161.1 Reference Chinese Lotus 1.1 Primary Assembly

    Range
    1544307..1547046
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010276024.2 → XP_010274326.1  acetolactate synthase 3, chloroplastic

    UniProtKB/TrEMBL
    A0A1U8B0Z8
    Conserved Domains (4) summary
    cd07035
    Location:102 → 257
    TPP_PYR_POX_like; Pyrimidine (PYR) binding domain of POX and related proteins
    PLN02470
    Location:86 → 671
    PLN02470; acetolactate synthase
    cd02015
    Location:463 → 655
    TPP_AHAS; Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the ...
    pfam00205
    Location:290 → 423
    TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
Nucleotide Protein
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