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LOC104600296 hydroxyproline O-galactosyltransferase HPGT1 [ Nelumbo nucifera (sacred lotus) ]

Gene ID: 104600296, updated on 21-Dec-2023

Summary

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Gene symbol
LOC104600296
Gene description
hydroxyproline O-galactosyltransferase HPGT1
Gene type
protein coding
RefSeq status
MODEL
Organism
Nelumbo nucifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Proteales; Nelumbonaceae; Nelumbo
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Genomic context

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See LOC104600296 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Chinese Lotus 1.1 (GCF_000365185.1) Unplaced Scaffold NW_010729101.1 (2582808..2607663)

NW_010729101.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104600294 Neighboring gene ABC transporter C family member 10-like Neighboring gene uncharacterized LOC104600297 Neighboring gene uncharacterized LOC104600298

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010729101.1 Unplaced Scaffold Reference Chinese Lotus 1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxyproline O-galactosyltransferase HPGT1
Names
probable beta-1,3-galactosyltransferase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nelumbo nucifera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Chinese Lotus 1.1 Primary Assembly

Genomic

  1. NW_010729101.1 Reference Chinese Lotus 1.1 Primary Assembly

    Range
    2582808..2607663
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010263166.2 → XP_010261468.1  hydroxyproline O-galactosyltransferase HPGT1

    UniProtKB/TrEMBL
    A0A1U8A4Y2
    Conserved Domains (1) summary
    PLN03193
    Location:1 → 341
    PLN03193; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
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