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LOC104585564 probable beta-1,3-galactosyltransferase 2 [ Brachypodium distachyon (stiff brome) ]

Gene ID: 104585564, updated on 9-Nov-2023

Summary

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Gene symbol
LOC104585564
Gene description
probable beta-1,3-galactosyltransferase 2
Locus tag
BRADI_1g32726v3
Gene type
protein coding
RefSeq status
MODEL
Organism
Brachypodium distachyon
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Stipodae; Brachypodieae; Brachypodium
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Genomic context

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See LOC104585564 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current Brachypodium_distachyon_v3.0 (GCF_000005505.3) 1 NC_016131.3 (28226931..28230310)
102 previous assembly Brachypodium_distachyon_v2.0 (GCF_000005505.2) 1 NC_016131.2 (28227647..28231040)

Chromosome 1 - NC_016131.3Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 1-like Neighboring gene transcription factor MYB97 Neighboring gene uncharacterized LOC100840800 Neighboring gene uncharacterized LOC104582110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable beta-1,3-galactosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Brachypodium distachyon Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Brachypodium_distachyon_v3.0 Primary Assembly

Genomic

  1. NC_016131.3 Reference Brachypodium_distachyon_v3.0 Primary Assembly

    Range
    28226931..28230310
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010242494.3 → XP_010240796.1  probable beta-1,3-galactosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    I1GW64
    Conserved Domains (3) summary
    PLN03193
    Location:8 → 397
    PLN03193; beta-1,3-galactosyltransferase; Provisional
    pfam13334
    Location:11 → 105
    DUF4094; Domain of unknown function (DUF4094)
    cl21608
    Location:145 → 340
    Galactosyl_T; Galactosyltransferase

  2. XM_024456741.1 → XP_024312509.1  probable beta-1,3-galactosyltransferase 2 isoform X2

    Conserved Domains (1) summary
    cl26217
    Location:9 → 324
    DUF4094; Domain of unknown function (DUF4094)
Nucleotide Protein Strain
Heading Accession and Version

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