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SPTLC3 serine palmitoyltransferase long chain base subunit 3 [ Tinamus guttatus (white-throated tinamou) ]

Gene ID: 104578410, updated on 19-Jun-2024

Summary

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Gene symbol
SPTLC3
Gene description
serine palmitoyltransferase long chain base subunit 3
Locus tag
N309_08111
Gene type
protein coding
RefSeq status
MODEL
Organism
Tinamus guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Tinamus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See SPTLC3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM70537v2 (GCF_000705375.1) Unplaced Scaffold NW_010589544.1 (3937..61323, complement)

NW_010589544.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104578404 Neighboring gene BTB domain containing 3 Neighboring gene jagged canonical Notch ligand 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010589544.1 Unplaced Scaffold Reference ASM70537v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 3
Names
Serine palmitoyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tinamus guttatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70537v2

Genomic

  1. NW_010589544.1 Reference ASM70537v2

    Range
    3937..61323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010225968.1 → XP_010224270.1  serine palmitoyltransferase 3

    UniProtKB/TrEMBL
    A0A099ZTA5
    Conserved Domains (2) summary
    PLN02483
    Location:59 → 310
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:109 → 310
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]
Nucleotide Protein
Heading Accession and Version

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