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CNTN1 contactin 1 [ Tinamus guttatus (white-throated tinamou) ]

Gene ID: 104566610, updated on 12-Mar-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
Locus tag
N309_08244
Gene type
protein coding
RefSeq status
MODEL
Organism
Tinamus guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Tinamus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
100 current ASM70537v2 (GCF_000705375.1) Unplaced Scaffold NW_010580612.1 (4117..69628, complement)

NW_010580612.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010580612.1 Unplaced Scaffold Reference ASM70537v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1
Names
Contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tinamus guttatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70537v2

Genomic

  1. NW_010580612.1 Reference ASM70537v2

    Range
    4117..69628 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010213416.1 → XP_010211718.1  contactin-1

    UniProtKB/TrEMBL
    A0A099Z1Q4
    Conserved Domains (9) summary
    cd04970
    Location:505 → 586
    Ig6_Contactin_like; Sixth Ig domain of contactin
    cd05727
    Location:120 → 216
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05851
    Location:226 → 313
    Ig3_Contactin-1; Third Ig domain of contactin-1
    cd05852
    Location:414 → 486
    Ig5_Contactin-1; Fifth Ig domain of contactin-1
    smart00410
    Location:234 → 312
    IG_like; Immunoglobulin like
    cd00063
    Location:595 → 686
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07679
    Location:27 → 116
    I-set; Immunoglobulin I-set domain
    pfam00041
    Location:797 → 878
    fn3; Fibronectin type III domain
    cl11960
    Location:26 → 118
    Ig; Immunoglobulin domain
Nucleotide Protein
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