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NPL N-acetylneuraminate pyruvate lyase [ Tinamus guttatus (white-throated tinamou) ]

Gene ID: 104566561, updated on 12-Mar-2024

Summary

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Gene symbol
NPL
Gene description
N-acetylneuraminate pyruvate lyase
Locus tag
N309_11499
Gene type
protein coding
RefSeq status
MODEL
Organism
Tinamus guttatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Tinamiformes; Tinamidae; Tinamus
Orthologs
human mouse all
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Genomic context

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See NPL in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM70537v2 (GCF_000705375.1) Unplaced Scaffold NW_010580596.1 (627385..652724)

NW_010580596.1Genomic Context describing neighboring genes Neighboring gene serpin family C member 1 Neighboring gene zinc finger and BTB domain containing 37 Neighboring gene heme binding protein 2 Neighboring gene DExH-box helicase 9 Neighboring gene SHC binding and spindle associated 1 like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_010580596.1 Unplaced Scaffold Reference ASM70537v2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 4-hydroxy-tetrahydrodipicolinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables N-acetylneuraminate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetylneuraminate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Tinamus guttatus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM70537v2

Genomic

  1. NW_010580596.1 Reference ASM70537v2

    Range
    627385..652724
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010213358.1 → XP_010211660.1  N-acetylneuraminate lyase isoform X1

    UniProtKB/TrEMBL
    A0A099Z3T3
    Conserved Domains (1) summary
    cl21457
    Location:7 → 297
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

  2. XM_010213359.1 → XP_010211661.1  N-acetylneuraminate lyase isoform X2

    UniProtKB/TrEMBL
    A0A099Z3T3
    Conserved Domains (1) summary
    cl21457
    Location:21 → 243
    TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...
Nucleotide Protein
Heading Accession and Version

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